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LDLRAD4-AS1 LDLRAD4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100288122, updated on 17-Jun-2024

Summary

Official Symbol
LDLRAD4-AS1provided by HGNC
Official Full Name
LDLRAD4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48592
See related
Ensembl:ENSG00000267690 AllianceGenome:HGNC:48592
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LDLRAD4-AS1 in Genome Data Viewer
Location:
18p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (13419499..13427534, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (13582372..13590395, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (13419498..13427533, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904255 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9333 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13239687-13240321 Neighboring gene low density lipoprotein receptor class A domain containing 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:13262681-13263619 Neighboring gene chromosome 18 putative open reading frame 15 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13265910-13266472 Neighboring gene Sharpr-MPRA regulatory region 6698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13272589-13273088 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13114 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:13280210-13280710 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:13280711-13281211 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:13286315-13286868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13291758-13292268 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:13302309-13302494 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13304109-13304608 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13303607-13304108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13318811-13319312 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:13320779-13321278 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:13366195-13366842 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:13375117-13376316 Neighboring gene Sharpr-MPRA regulatory region 1453 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13379815-13380316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13380317-13380816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13381508-13382132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13425961-13426523 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:13446323-13447026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:13447027-13447730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13454951-13455594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:13455595-13456240 Neighboring gene Sharpr-MPRA regulatory region 5399 Neighboring gene uncharacterized LOC124904256 Neighboring gene microRNA 5190

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040031.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002439, BC042085, DT217238
    Related
    ENST00000588672.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    13419499..13427534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    13582372..13590395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)