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LOC100287896 uncharacterized LOC100287896 [ Homo sapiens (human) ]

Gene ID: 100287896, updated on 20-Mar-2020

Summary

Gene symbol
LOC100287896
Gene description
uncharacterized LOC100287896
See related
Ensembl:ENSG00000254837
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 4.4), thyroid (RPKM 3.6) and 24 other tissues See more
Orthologs

Genomic context

See LOC100287896 in Genome Data Viewer
Location:
11q13.4
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (74493385..74498594)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (74204485..74209287)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene probable ribosome biogenesis protein RLP24 pseudogene Neighboring gene CYCS pseudogene 27 Neighboring gene lipoyl(octanoyl) transferase 2 Neighboring gene uncharacterized LOC105369386 Neighboring gene DNA polymerase delta 3, accessory subunit Neighboring gene RAN pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • MGC12965, AP001372.2, DKFZp686O15256

General protein information

Preferred Names
uncharacterized protein LOC100287896

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001319240.1NP_001306169.1  uncharacterized protein LOC100287896

    Status: VALIDATED

    Source sequence(s)
    AP001372, BC019340, BX647206, CA389337, DY654620
    UniProtKB/TrEMBL
    Q8TB74
    Related
    ENST00000526036.1
    Conserved Domains (2) summary
    pfam03221
    Location:132192
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:6699
    HTH; Helix-turn-helix domains

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    74493385..74498594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017017055.1XP_016872544.1  uncharacterized protein LOC100287896 isoform X1

    Conserved Domains (2) summary
    pfam03221
    Location:132192
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:6699
    HTH; Helix-turn-helix domains

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198519.1: Suppressed sequence

    Description
    NM_198519.1: This RefSeq was permanently suppressed because it is mostly repetitive sequence.
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