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LOXL1-AS1 LOXL1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100287616, updated on 29-Mar-2023

Summary

Official Symbol
LOXL1-AS1provided by HGNC
Official Full Name
LOXL1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44169
See related
Ensembl:ENSG00000261801 MIM:616800; AllianceGenome:HGNC:44169
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 4.0), prostate (RPKM 3.8) and 23 other tissues See more
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Genomic context

See LOXL1-AS1 in Genome Data Viewer
Location:
15q24.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (73917468..73928248, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (71734797..71745594, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (74209809..74220589, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 21 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:74173695-74174256 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:74194653-74195154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:74214297-74215284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:74215285-74216270 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:74219309-74220142 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:74220143-74220976 Neighboring gene Sharpr-MPRA regulatory region 13651 Neighboring gene lysyl oxidase like 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:74229856-74230455

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • LOXL1 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ10302

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040066.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC108137, AK056885, BQ020741
    Related
    ENST00000567257.5
  2. NR_040067.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC108137, AK056885, BQ020741, DA038997
  3. NR_040068.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons and includes an alternate exon, compared to variant 1.
    Source sequence(s)
    AK056376, AK056885, BQ020741
    Related
    ENST00000564194.5
  4. NR_040069.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC108137, AK056376, AK056885, BQ020741, DA021396
  5. NR_040070.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks two exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC108137, AK056885, BQ020741, BX355383, BX366015
    Related
    ENST00000565416.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    73917468..73928248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    71734797..71745594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)