Format

Send to:

Choose Destination

LOXL1-AS1 LOXL1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100287616, updated on 6-Sep-2021

Summary

Official Symbol
LOXL1-AS1provided by HGNC
Official Full Name
LOXL1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44169
See related
Ensembl:ENSG00000261801 MIM:616800
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 4.0), prostate (RPKM 3.8) and 23 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOXL1-AS1 in Genome Data Viewer
Location:
15q24.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (73917468..73928248, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (74209809..74220589, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723657 Neighboring gene TBC1 domain family member 21 Neighboring gene lysyl oxidase like 1 Neighboring gene stomatin like 1 Neighboring gene PML nuclear body scaffold

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma.
GeneReviews: Not available

General gene information

Markers

Other Names

  • LOXL1 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ10302

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040066.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC108137, AK056885, BQ020741
    Related
    ENST00000567257.5
  2. NR_040067.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC108137, AK056885, BQ020741, DA038997
  3. NR_040068.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons and includes an alternate exon, compared to variant 1.
    Source sequence(s)
    AK056376, AK056885, BQ020741
    Related
    ENST00000564194.5
  4. NR_040069.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC108137, AK056376, AK056885, BQ020741, DA021396
  5. NR_040070.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks two exons, includes an alternate exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AC108137, AK056885, BQ020741, BX355383, BX366015

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    73917468..73928248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center