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SMKR1 small lysine rich protein 1 [ Homo sapiens (human) ]

Gene ID: 100287482, updated on 11-Jun-2021

Summary

Official Symbol
SMKR1provided by HGNC
Official Full Name
small lysine rich protein 1provided by HGNC
Primary source
HGNC:HGNC:43561
See related
Ensembl:ENSG00000240204
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 44.7) See more
Orthologs
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Genomic context

See SMKR1 in Genome Data Viewer
Location:
7q32.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (129502531..129512918)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (129142372..129152759)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene striatin interacting protein 2 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 3 Neighboring gene RNA, U1 small nuclear 72, pseudogene Neighboring gene uncharacterized LOC107986848 Neighboring gene nuclear respiratory factor 1 Neighboring gene RNA, 5S ribosomal pseudogene 244

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
small lysine-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195243.2NP_001182172.1  small lysine-rich protein 1

    See identical proteins and their annotated locations for NP_001182172.1

    Status: VALIDATED

    Source sequence(s)
    BC035417, BC050400
    Consensus CDS
    CCDS59077.1
    UniProtKB/Swiss-Prot
    H3BMG3
    Related
    ENSP00000454370.1, ENST00000462322.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    129502531..129512918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024446620.1XP_024302388.1  small lysine-rich protein 1 isoform X1

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