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LINC01630 long intergenic non-protein coding RNA 1630 [ Homo sapiens (human) ]

Gene ID: 100287225, updated on 23-Nov-2021

Summary

Official Symbol
LINC01630provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1630provided by HGNC
Primary source
HGNC:HGNC:52295
See related
Ensembl:ENSG00000227115
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01630 in Genome Data Viewer
Location:
18q21.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (51392042..51562469)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (48918412..49088839)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372118 Neighboring gene mex-3 RNA binding family member C Neighboring gene RNA, U1 small nuclear 46, pseudogene Neighboring gene neuroepithelial cell transforming 1 pseudogene Neighboring gene SS18 like 2 pseudogene 2 Neighboring gene ribosomal L24 domain containing 1 pseudogene 9 Neighboring gene uncharacterized LOC105372120

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040074.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) defines the longer locus extent.
    Source sequence(s)
    AC011260, AC109315
  2. NR_040075.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has the same first exon as variant 1, and represents a novel second exon and 3' end.
    Source sequence(s)
    AC109315
    Related
    ENST00000578152.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

    Range
    51392042..51562469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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