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LOC100286190 auxin-independent growth promoter-like protein [ Zea mays ]

Gene ID: 100286190, updated on 27-Nov-2024

Summary

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Gene symbol
LOC100286190
Gene description
auxin-independent growth promoter-like protein
Locus tag
ZEAMMB73_Zm00001d036546
See related
EnsemblRapid:Zm00001eb273490
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G139657
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Genomic context

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See LOC100286190 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (98701991..98706263)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (91581267..91585539)

Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene probable beta-1,4-xylosyltransferase IRX14 Neighboring gene probable methyltransferase PMT9 Neighboring gene uncharacterized LOC100275130 Neighboring gene uncharacterized LOC100276034

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
auxin-independent growth promoter-like protein
Names
auxin-independent growth promoter-like protein, mRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159078.2 → NP_001152550.2  auxin-independent growth promoter-like protein

    Status: VALIDATED

    Source sequence(s)
    BM080007, BT055004
    UniProtKB/TrEMBL
    B4FW98, B6UFP0
    Related
    Zm00001eb273490_P004, Zm00001eb273490_T004
    Conserved Domains (1) summary
    cd11299
    Location:158 → 494
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    98701991..98706263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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