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LOC100285738 uncharacterized LOC100285738 [ Zea mays ]

Gene ID: 100285738, updated on 3-Apr-2024

Summary

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Gene symbol
LOC100285738
Gene description
uncharacterized LOC100285738
Locus tag
ZEAMMB73_Zm00001d007889
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
pco139663a; GRMZM2G037923
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Genomic context

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Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (239948391..239954656, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (241874597..241880801, complement)

Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene biopterin transport-related protein BT1 Neighboring gene pentatricopeptide repeat-containing protein Neighboring gene uncharacterized LOC100285206 Neighboring gene uncharacterized LOC100194048

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
  2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

  • PZA00145_Zea_mays_ssp._parviglumis_CIMMYT_11355 (e-PCR)

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Casein kinase 1-like protein HD16; uncharacterized protein LOC100285738
Names
ATP binding protein
pco139663(195)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001158629.2 → NP_001152101.1  Casein kinase 1-like protein HD16

    See identical proteins and their annotated locations for NP_001152101.1

    Status: VALIDATED

    Source sequence(s)
    DV511521, EC878591, FL280130, FL280131, GECR01000360, GECS01002869, GJCA01014074
    UniProtKB/TrEMBL
    B6U8U2, C0PLU2
    Conserved Domains (1) summary
    cd14016
    Location:145 → 418
    STKc_CK1; Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1

  2. NM_001413737.1 → NP_001400666.1  Casein kinase 1-like protein HD16

    Status: VALIDATED

    Source sequence(s)
    DV511521, EC878591, FL280131, GECR01000360, GECS01002869, GJCA01014074
    UniProtKB/TrEMBL
    B6U8U2

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    239948391..239954656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008669927.4 → XP_008668149.1  uncharacterized protein LOC100285738 isoform X1

    UniProtKB/TrEMBL
    B6U8U2
    Conserved Domains (1) summary
    cd14016
    Location:145 → 418
    STKc_CK1; Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1

  2. XM_035964844.1 → XP_035820737.1  uncharacterized protein LOC100285738 isoform X1

    UniProtKB/TrEMBL
    B6U8U2, C0PLU2
    Conserved Domains (1) summary
    cd14016
    Location:145 → 418
    STKc_CK1; Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1
Nucleotide Protein
Heading Accession and Version

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