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LOC100280934 uncharacterized LOC100280934 [ Zea mays ]

Gene ID: 100280934, updated on 27-Nov-2024

Summary

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Gene symbol
LOC100280934
Gene description
uncharacterized LOC100280934
Locus tag
ZEAMMB73_Zm00001d028331
See related
EnsemblRapid:Zm00001eb009780
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
TIDP3265; GRMZM2G012758
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Genomic context

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See LOC100280934 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (30732639..30744552)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (31039802..31051715)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene protein ALP1-like Neighboring gene uncharacterized LOC103633223 Neighboring gene uncharacterized LOC100278274 Neighboring gene sodium/hydrogen exchanger - dihydroorotase - Thiamine pyrophosphate pseudogene Neighboring gene uncharacterized LOC100279780 Neighboring gene uncharacterized LOC118473502

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Glucan endo-1,3-beta-glucosidase 7
Names
glucan endo-1,3-beta-glucosidase 7
putative O-glycosyl hydrolase family 17 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001153854.2 → NP_001147326.1  Glucan endo-1,3-beta-glucosidase 7 precursor

    See identical proteins and their annotated locations for NP_001147326.1

    Status: VALIDATED

    Source sequence(s)
    EU954692, FL043599
    UniProtKB/TrEMBL
    A0A317Y4H0, A0A317Y719, B4FYP4
    Related
    Zm00001eb009780_P001, Zm00001eb009780_T001
    Conserved Domains (1) summary
    cl23725
    Location:30 → 341
    Glyco_hydro; Glycosyl hydrolases

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    30732639..30744552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials