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LOC100273574 uncharacterized LOC100273574 [ Zea mays ]

Gene ID: 100273574, updated on 27-Nov-2024

Summary

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Gene symbol
LOC100273574
Gene description
uncharacterized LOC100273574
Locus tag
ZEAMMB73_Zm00001d011369
See related
EnsemblRapid:Zm00001eb358400
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
pco131841; GRMZM2G052844
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Genomic context

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See LOC100273574 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (148276855..148280043)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (148782583..148785424)

Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene formate dehydrogenase 1, mitochondrial Neighboring gene U2 spliceosomal RNA Neighboring gene Hydrolase, hydrolyzing O-glycosyl compound Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
  2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
  3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Probable polygalacturonase; uncharacterized protein LOC100273574
Names
Pectin lyase-like superfamily protein
pco131841(636)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001147992.1 → NP_001141464.1  Probable polygalacturonase precursor

    See identical proteins and their annotated locations for NP_001141464.1

    Status: PROVISIONAL

    Source sequence(s)
    BT064242
    UniProtKB/TrEMBL
    A0A3L6DPM5, A0A804QVU8, B4FWD4
    Related
    Zm00001eb358400_P004, Zm00001eb358400_T004
    Conserved Domains (1) summary
    COG5434
    Location:44 → 412
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    148276855..148280043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035961339.1 → XP_035817232.1  uncharacterized protein LOC100273574 isoform X1

    UniProtKB/TrEMBL
    A0A3L6DPM5, A0A804QVU8, B4FWD4
    Related
    Zm00001eb358400_P002, Zm00001eb358400_T002
    Conserved Domains (1) summary
    COG5434
    Location:44 → 412
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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