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AIRN antisense of IGF2R non-protein coding RNA [ Homo sapiens (human) ]

Gene ID: 100271873, updated on 9-Oct-2022

Summary

Official Symbol
AIRNprovided by HGNC
Official Full Name
antisense of IGF2R non-protein coding RNAprovided by HGNC
Primary source
HGNC:HGNC:34515
See related
Ensembl:ENSG00000268257 MIM:604893; AllianceGenome:HGNC:34515
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AIR; IGF2RAS; IGF2R-AS; IGF2R-AS1; NCRNA00088
Summary
Both spliced and un-spliced long non-coding RNAs are transcribed from this gene. This gene overlaps on the opposite strand the second intron of the insulin-like growth factor 2 receptor gene; a CpG island associated with the second intron denotes an active promoter that drives the expression of this gene. The related mouse gene is responsible for silencing the insulin-like growth factor 2 receptor gene and flanking genes in the imprinted gene cluster of mice. This gene may be expressed in Wilms tumors. [provided by RefSeq, Feb 2013]
Expression
Low expression observed in reference dataset See more
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Genomic context

See AIRN in Genome Data Viewer
Location:
6q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (160003291..160007664, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (161249475..161253848, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (160424323..160428696, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 2 receptor Neighboring gene Sharpr-MPRA regulatory region 15614 Neighboring gene Sharpr-MPRA regulatory region 12427 Neighboring gene uncharacterized LOC124901451 Neighboring gene CHP1 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047511.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) is a spliced transcript and consists of three exons.
    Source sequence(s)
    AL035691
    Related
    ENST00000609176.1
  2. NR_047514.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) represents a unspliced transcript.
    Source sequence(s)
    AL035691
    Related
    ENST00000601203.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    160003291..160007664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    161249475..161253848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)