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RPS3AP46 RPS3A pseudogene 46 [ Homo sapiens (human) ]

Gene ID: 100271596, updated on 10-Dec-2024

Summary

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Official Symbol
RPS3AP46provided by HGNC
Official Full Name
RPS3A pseudogene 46provided by HGNC
Primary source
HGNC:HGNC:36338
See related
Ensembl:ENSG00000226132 AllianceGenome:HGNC:36338
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS3A_19_1365
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Genomic context

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See RPS3AP46 in Genome Data Viewer
Location:
14q22.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (53612798..53613381)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (47821069..47821649)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (54079516..54080099)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8403 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5753 Neighboring gene NANOG hESC enhancer GRCh37_chr14:53726964-53727525 Neighboring gene Sharpr-MPRA regulatory region 9489 Neighboring gene uncharacterized LOC105370504 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:53822218-53822978 Neighboring gene VISTA enhancer hs1151 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:53858219-53859418 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:53924665-53925864 Neighboring gene VISTA enhancer hs1629 Neighboring gene uncharacterized LOC124903316 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:54074633-54075832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5754 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8404 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8406 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5755 Neighboring gene long intergenic non-protein coding RNA 2331 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8407 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:54316803-54318002 Neighboring gene uncharacterized LOC107984676 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8408

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • ribosomal protein S3a pseudogene 46

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011220.1 

    Range
    101..684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    53612798..53613381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    47821069..47821649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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