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CASC11 cancer susceptibility 11 [ Homo sapiens (human) ]

Gene ID: 100270680, updated on 13-May-2022

Summary

Official Symbol
CASC11provided by HGNC
Official Full Name
cancer susceptibility 11provided by HGNC
Primary source
HGNC:HGNC:48939
See related
Ensembl:ENSG00000249375 MIM:617704; AllianceGenome:HGNC:48939
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MYMLR; CARLO7; CARLo-7; LINC00990; TCONS_00014535
Expression
Low expression observed in reference dataset See more
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Genomic context

See CASC11 in Genome Data Viewer
Location:
8q24.21
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (127700608..127733967, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (128828063..128861419, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (128712853..128746213, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene cancer susceptibility 8 Neighboring gene POU class 5 homeobox 1B Neighboring gene uncharacterized LOC105375754 Neighboring gene origin of replication upstream of MYC Neighboring gene MYC proto-oncogene, bHLH transcription factor Neighboring gene microRNA 1204 Neighboring gene Pvt1 oncogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • MYC-modulating lncRNA
  • cancer susceptibility 11 (non-protein coding)
  • cancer susceptibility candidate 11 (non-protein coding)
  • long intergenic non-protein coding RNA 990

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_117101.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC103819
    Related
    ENST00000518376.2
  2. NR_117102.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains three alternate 3' exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC103819, AC108925
    Related
    ENST00000519071.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    127700608..127733967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    128828063..128861419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)