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LOC100263685 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [ Vitis vinifera (wine grape) ]

Gene ID: 100263685, updated on 3-Apr-2024

Summary

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Gene symbol
LOC100263685
Gene description
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
Locus tag
VIT_00025844001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
Also known as
GO:0008168 GO:0018024 GO:0008270 GO:0016740 GO:0005634 GO:0016568
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Genomic context

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See LOC100263685 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (12456999..12461070)
102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (11294638..11298751)

Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase At1g12760 Neighboring gene alpha-L-arabinofuranosidase 1 Neighboring gene uncharacterized LOC104880095 Neighboring gene probable protein S-acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

    Range
    12456999..12461070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059738986.1 → XP_059594969.1  histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

    UniProtKB/TrEMBL
    F6HQS6

RNA

  1. XR_009466395.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases