U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100262665 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [ Vitis vinifera (wine grape) ]

Gene ID: 100262665, updated on 23-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100262665
Gene description
4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
Locus tag
VIT_00027627001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100262665 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 15 NC_081819.1 (17917575..17923997, complement)
102 previous assembly 12X (GCF_000003745.3) 15 NC_012021.3 (14897017..14903454, complement)

Chromosome 15 - NC_081819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104881894 Neighboring gene uncharacterized LOC100260735 Neighboring gene kinesin-like protein KIN-UB Neighboring gene putative DNA-binding protein ESCAROLA-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-tetrahydrodipicolinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lysine biosynthetic process via diaminopimelate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
Names
dihydrodipicolinate synthase 2, chloroplastic-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081819.1 Reference ASM3070453v1 Primary Assembly

    Range
    17917575..17923997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002279804.5 → XP_002279840.1  4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

    See identical proteins and their annotated locations for XP_002279840.1

    UniProtKB/TrEMBL
    A0A438E022, D7U7T8
    Conserved Domains (1) summary
    PLN02417
    Location:64 → 343
    PLN02417; dihydrodipicolinate synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials