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LOC100253665 uncharacterized LOC100253665 [ Vitis vinifera (wine grape) ]

Gene ID: 100253665, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100253665
Gene description
uncharacterized LOC100253665
Locus tag
VIT_00025114001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100253665 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (4362801..4366876)
102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (4320189..4324243)

Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene NEDD8-specific protease 1 Neighboring gene V-type proton ATPase subunit a1 Neighboring gene uncharacterized LOC100255365 Neighboring gene uncharacterized LOC100258807

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100253665
Names
DDB1- and CUL4-associated factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

    Range
    4362801..4366876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002284812.5 → XP_002284848.1  uncharacterized protein LOC100253665

    See identical proteins and their annotated locations for XP_002284848.1

    UniProtKB/TrEMBL
    A0A438KNB0, D7SKS3
    Conserved Domains (3) summary
    COG2319
    Location:47 → 381
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:57 → 93
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:44 → 381
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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