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LOC100243827 squamosa promoter-binding-like protein 16 [ Vitis vinifera (wine grape) ]

Gene ID: 100243827, updated on 20-Nov-2023

Summary

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Gene symbol
LOC100243827
Gene description
squamosa promoter-binding-like protein 16
Locus tag
VIT_00010522001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (26142317..26147464, complement)
102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (21412823..21417954, complement)

Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104880621 Neighboring gene flowering locus C Neighboring gene AP2/ERF and B3 domain-containing transcription factor At1g51120 Neighboring gene MADS-box protein 4 Neighboring gene uncharacterized LOC100248973 Neighboring gene probable WRKY transcription factor 75

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
  2. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

    Range
    26142317..26147464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019222271.2 → XP_019077816.1  squamosa promoter-binding-like protein 16

    UniProtKB/TrEMBL
    A0A438IRP2, A5BHV4

  2. XM_010657827.3 → XP_010656129.1  squamosa promoter-binding-like protein 16

    See identical proteins and their annotated locations for XP_010656129.1

    UniProtKB/TrEMBL
    A0A438IRP2, A5BHV4
    Conserved Domains (1) summary
    pfam03110
    Location:91 → 165
    SBP; SBP domain

  3. XM_059735718.1 → XP_059591701.1  squamosa promoter-binding-like protein 16

    UniProtKB/TrEMBL
    A0A438IRP2, A5BHV4

  4. XM_059735720.1 → XP_059591703.1  squamosa promoter-binding-like protein 16

    UniProtKB/TrEMBL
    A0A438IRP2, A5BHV4
Nucleotide Protein
Heading Accession and Version

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