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LOC100216736 uncharacterized LOC100216736 [ Zea mays ]

Gene ID: 100216736, updated on 27-Nov-2024

Summary

Gene symbol
LOC100216736
Gene description
uncharacterized LOC100216736
Locus tag
ZEAMMB73_Zm00001d018214
See related
EnsemblRapid:Zm00001eb256330
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
pco106344; GRMZM2G046459
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Genomic context

See LOC100216736 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (219288621..219291858, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (216732294..216735531, complement)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase 1Acc oxidase Neighboring gene salivary acidic proline-rich phosphoprotein 1/2-like Neighboring gene uncharacterized LOC103627801 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

General protein information

Preferred Names
Glucan endo-1,3-beta-glucosidase 12; uncharacterized protein LOC100216736
Names
O-Glycosyl hydrolase family 17 protein
pco106344(452)
putative O-glycosyl hydrolase family 17 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001143141.2NP_001136613.2  Glucan endo-1,3-beta-glucosidase 12 precursor

    See identical proteins and their annotated locations for NP_001136613.2

    Status: VALIDATED

    Source sequence(s)
    BT041736
    UniProtKB/TrEMBL
    B4FA75, B4FJH8
    Related
    Zm00001eb256330_P001, Zm00001eb256330_T001
    Conserved Domains (2) summary
    smart00768
    Location:393475
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:29351
    Glyco_hydro_1; Glycosyl hydrolase family 1

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    219288621..219291858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020553106.1XP_020408695.1  uncharacterized protein LOC100216736 isoform X1

    UniProtKB/TrEMBL
    A0A3L6EGW4, C4J480
    Conserved Domains (2) summary
    smart00768
    Location:393471
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:29351
    Glyco_hydro_1; Glycosyl hydrolase family 1