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Snord118 small nucleolar RNA, C/D box 118 [ Mus musculus (house mouse) ]

Gene ID: 100216530, updated on 31-May-2024

Summary

Official Symbol
Snord118provided by MGI
Official Full Name
small nucleolar RNA, C/D box 118provided by MGI
Primary source
MGI:MGI:3819519
See related
Ensembl:ENSMUSG00000064899 AllianceGenome:MGI:3819519
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MBI-34
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Genomic context

See Snord118 in Genome Data Viewer
Location:
11 B3; 11 42.35 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (68964252..68964388)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (69073426..69073562)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5238 Neighboring gene nuclear encoded tRNA trytophan 6 (anticodon CCA) Neighboring gene STARR-positive B cell enhancer ABC_E590 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:68887007-68887116 Neighboring gene transmembrane protein 107 Neighboring gene STARR-positive B cell enhancer ABC_E7003 Neighboring gene vesicle-associated membrane protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E197 Neighboring gene STARR-positive B cell enhancer ABC_E733 Neighboring gene period circadian clock 1

Genomic regions, transcripts, and products

General gene information

Other Names

  • 5.4S snRNA

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028566.4 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL645902
    Related
    ENSMUST00000082965.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    68964252..68964388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)