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septin7 septin 7 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100216295, updated on 8-Mar-2024

Summary

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Official Symbol
septin7provided by Xenbase
Official Full Name
septin 7provided by Xenbase
Primary source
Xenbase:XB-GENE-957464
See related
Ensembl:ENSXETG00000013112
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
cdc10; sept7
Orthologs
human mouse all
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Genomic context

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See septin7 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (64070089..64140044, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (81346817..81416294, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene microtubule associated tyrosine carboxypeptidase 2 Neighboring gene endonuclease/exonuclease/phosphatase family domain containing 1 Neighboring gene HERPUD family member 2 Neighboring gene T-box 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
located_in cleavage furrow IEA
Inferred from Electronic Annotation
more info
  
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
  
part_of septin complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
septin-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    64070089..64140044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004915343.4 → XP_004915400.1  septin-7 isoform X6

    UniProtKB/TrEMBL
    A0A8J0R2F5, F7EIT8
    Related
    ENSXETP00000090320.2, ENSXETT00000070381.2
    Conserved Domains (2) summary
    cd01850
    Location:28 → 298
    CDC_Septin; CDC/Septin GTPase family
    pfam17380
    Location:288 → 410
    DUF5401; Family of unknown function (DUF5401)

  2. XM_002939413.5 → XP_002939459.1  septin-7 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QML0, F7EIT8
    Related
    ENSXETP00000074267.2, ENSXETT00000079366.2
    Conserved Domains (2) summary
    cd01850
    Location:28 → 298
    CDC_Septin; CDC/Septin GTPase family
    pfam17380
    Location:325 → 417
    DUF5401; Family of unknown function (DUF5401)

  3. XM_031903518.1 → XP_031759378.1  septin-7 isoform X4

    UniProtKB/TrEMBL
    A0A8J1JNC0, F7EIT8
    Conserved Domains (2) summary
    cd01850
    Location:28 → 298
    CDC_Septin; CDC/Septin GTPase family
    pfam17380
    Location:325 → 417
    DUF5401; Family of unknown function (DUF5401)

  4. XM_004915342.4 → XP_004915399.1  septin-7 isoform X5

    UniProtKB/TrEMBL
    A0A8J0R5E6, F7EIT8
    Related
    ENSXETP00000028712.5, ENSXETT00000028712.5
    Conserved Domains (3) summary
    cd01850
    Location:27 → 297
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:9 → 397
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam10211
    Location:350 → 408
    Ax_dynein_light; Axonemal dynein light chain

  5. XM_031903517.1 → XP_031759377.1  septin-7 isoform X2

    UniProtKB/TrEMBL
    A0A8J1JNC1, F7EIT8
    Related
    ENSXETP00000028714.5, ENSXETT00000028714.5
    Conserved Domains (2) summary
    cd01850
    Location:37 → 307
    CDC_Septin; CDC/Septin GTPase family
    cl27170
    Location:330 → 420
    DUF460; Protein of unknown function (DUF460)

  6. XM_031903516.1 → XP_031759376.1  septin-7 isoform X1

    UniProtKB/TrEMBL
    A0A8J1JS21, F7EIT8
    Conserved Domains (2) summary
    cd01850
    Location:37 → 307
    CDC_Septin; CDC/Septin GTPase family
    pfam17380
    Location:334 → 426
    DUF5401; Family of unknown function (DUF5401)
Nucleotide Protein Strain
Heading Accession and Version

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