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zmiz1 zinc finger, MIZ-type containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100216096, updated on 8-Mar-2024

Summary

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Official Symbol
zmiz1provided by Xenbase
Official Full Name
zinc finger, MIZ-type containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-1021737
See related
Ensembl:ENSXETG00000018359
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
miz; rai17; zimz1; zimp10; hzimp10
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
32
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (53276319..53503540, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (55922451..56158534, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene zinc finger, CCHC domain containing 24 Neighboring gene peptidylprolyl isomerase F Neighboring gene ribosomal protein S24 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide A, 155kDa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of macromolecule metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger MIZ domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142079.1 → NP_001135551.1  zinc finger MIZ domain-containing protein 1

    See identical proteins and their annotated locations for NP_001135551.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168031
    UniProtKB/TrEMBL
    A0A6I8S8P0, B4F6V9, F6V623
    Conserved Domains (3) summary
    pfam09606
    Location:4 → 373
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:635 → 682
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam09770
    Location:813 → 933
    PAT1; Topoisomerase II-associated protein PAT1

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    53276319..53503540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904889.1 → XP_031760749.1  zinc finger MIZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS80
    Conserved Domains (5) summary
    PHA03247
    Location:346 → 625
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 518
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:780 → 827
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:946 → 1069
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  2. XM_031904897.1 → XP_031760757.1  zinc finger MIZ domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS76
    Conserved Domains (4) summary
    pfam09606
    Location:129 → 509
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:756 → 803
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:922 → 1045
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  3. XM_031904894.1 → XP_031760754.1  zinc finger MIZ domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS85
    Conserved Domains (4) summary
    pfam09606
    Location:129 → 512
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:774 → 821
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:940 → 1063
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  4. XM_031904896.1 → XP_031760756.1  zinc finger MIZ domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JW04
    Conserved Domains (4) summary
    pfam09606
    Location:129 → 515
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:762 → 809
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:928 → 1051
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  5. XM_031904895.1 → XP_031760755.1  zinc finger MIZ domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JUN8
    Conserved Domains (5) summary
    PHA03247
    Location:346 → 581
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 518
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:765 → 812
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:931 → 1054
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  6. XM_031904888.1 → XP_031760748.1  zinc finger MIZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS80
    Conserved Domains (5) summary
    PHA03247
    Location:346 → 625
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 518
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:780 → 827
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:946 → 1069
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  7. XM_012966213.3 → XP_012821667.1  zinc finger MIZ domain-containing protein 1 isoform X5

    See identical proteins and their annotated locations for XP_012821667.1

    UniProtKB/TrEMBL
    A0A6I8R3V6, A0A6I8S8P0
    Conserved Domains (1) summary
    pfam02891
    Location:761 → 809
    zf-MIZ; MIZ/SP-RING zinc finger

  8. XM_012966212.3 → XP_012821666.1  zinc finger MIZ domain-containing protein 1 isoform X5

    See identical proteins and their annotated locations for XP_012821666.1

    UniProtKB/TrEMBL
    A0A6I8R3V6, A0A6I8S8P0
    Conserved Domains (1) summary
    pfam02891
    Location:761 → 809
    zf-MIZ; MIZ/SP-RING zinc finger

  9. XM_031904901.1 → XP_031760761.1  zinc finger MIZ domain-containing protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JW11
    Conserved Domains (4) summary
    pfam09606
    Location:129 → 500
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:736 → 783
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:902 → 1025
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  10. XM_031904893.1 → XP_031760753.1  zinc finger MIZ domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS68
    Conserved Domains (4) summary
    pfam09606
    Location:129 → 515
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:777 → 824
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:943 → 1066
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  11. XM_031904898.1 → XP_031760758.1  zinc finger MIZ domain-containing protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS74
    Conserved Domains (5) summary
    PHA03247
    Location:358 → 578
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 503
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:754 → 801
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:920 → 1043
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  12. XM_031904887.1 → XP_031760747.1  zinc finger MIZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS80
    Conserved Domains (5) summary
    PHA03247
    Location:346 → 625
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 518
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:780 → 827
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:946 → 1069
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  13. XM_018095301.2 → XP_017950790.1  zinc finger MIZ domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I8R3V6, A0A6I8S8P0

  14. XM_018095300.2 → XP_017950789.1  zinc finger MIZ domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I8R3V6, A0A6I8S8P0
    Related
    ENSXETP00000075197.2, ENSXETT00000097048.2

  15. XM_031904892.1 → XP_031760752.1  zinc finger MIZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS80
    Conserved Domains (5) summary
    PHA03247
    Location:346 → 625
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 518
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:780 → 827
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:946 → 1069
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  16. XM_031904899.1 → XP_031760759.1  zinc finger MIZ domain-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS90
    Conserved Domains (5) summary
    PHA03247
    Location:430 → 573
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 500
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:751 → 798
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:917 → 1040
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  17. XM_031904891.1 → XP_031760751.1  zinc finger MIZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS80
    Conserved Domains (5) summary
    PHA03247
    Location:346 → 625
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 518
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:780 → 827
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:946 → 1069
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  18. XM_031904890.1 → XP_031760750.1  zinc finger MIZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A8J1JS80
    Conserved Domains (5) summary
    PHA03247
    Location:346 → 625
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:129 → 518
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16791
    Location:780 → 827
    SP-RING_ZMIZ; SP-RING finger found in zinc finger MIZ domain-containing protein Zmiz1, Zmiz2, and similar proteins
    pfam18028
    Location:26 → 118
    Zmiz1_N; Zmiz1 N-terminal tetratricopeptide repeat domain
    cl41729
    Location:946 → 1069
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  19. XM_012966220.3 → XP_012821674.1  zinc finger MIZ domain-containing protein 1 isoform X11

    See identical proteins and their annotated locations for XP_012821674.1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A803KH35
    Related
    ENSXETP00000039780.4, ENSXETT00000039780.4
    Conserved Domains (1) summary
    pfam02891
    Location:637 → 685
    zf-MIZ; MIZ/SP-RING zinc finger

  20. XM_012966221.3 → XP_012821675.1  zinc finger MIZ domain-containing protein 1 isoform X11

    See identical proteins and their annotated locations for XP_012821675.1

    UniProtKB/TrEMBL
    A0A6I8S8P0, A0A803KH35
    Conserved Domains (1) summary
    pfam02891
    Location:637 → 685
    zf-MIZ; MIZ/SP-RING zinc finger
Nucleotide Protein Strain
Heading Accession and Version

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