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LOC100214301 josephin-2-like [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100214301, updated on 3-Apr-2024

Summary

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Gene symbol
LOC100214301
Gene description
josephin-2-like
See related
EnsemblRapid:LOC100214301
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Hydra_105_v3 (GCF_022113875.1) 11 NC_061166.1 (26368682..26384361, complement)
102 previous assembly Hydra_RP_1.0 (GCF_000004095.1) Unplaced Scaffold NW_004169744.1 (52526..66695)

Chromosome 11 - NC_061166.1Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase-interacting protein Neighboring gene inositol-tetrakisphosphate 1-kinase Neighboring gene uncharacterized LOC124817461 Neighboring gene uncharacterized LOC105846233 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
josephin-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hydra vulgaris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hydra_105_v3 Primary Assembly

Genomic

  1. NC_061166.1 Reference Hydra_105_v3 Primary Assembly

    Range
    26368682..26384361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047287591.1 → XP_047143547.1  josephin-2-like isoform X1

    Related
    XP_047143547.1, XM_047287591.1

  2. XM_012704756.2 → XP_012560210.1  josephin-2-like isoform X3

    See identical proteins and their annotated locations for XP_012560210.1

    UniProtKB/TrEMBL
    A0A8B7DPL0, T2M9H9
    Related
    XP_012560210.1, XM_012704756.2
    Conserved Domains (1) summary
    pfam02099
    Location:9 → 158
    Josephin; Josephin

  3. XM_047287593.1 → XP_047143549.1  josephin-2-like isoform X3

    UniProtKB/TrEMBL
    A0A8B7DPL0
    Related
    XP_047143549.1, XM_047287593.1

  4. XM_047287592.1 → XP_047143548.1  josephin-2-like isoform X2

    Related
    XP_047143548.1, XM_047287592.1
Nucleotide Protein
Heading Accession and Version

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