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LOC100213188 retinoic acid receptor RXR-alpha-B [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100213188, updated on 1-Aug-2024

Summary

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Gene symbol
LOC100213188
Gene description
retinoic acid receptor RXR-alpha-B
See related
EnsemblRapid:LOC100213188
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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See LOC100213188 in Genome Data Viewer
Location:
chromosome: 02
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current HydraT2T_105 (GCF_037890685.1) 02 NC_088965.1 (56506005..56511777, complement)
RS_2024_06 current HydraT2T_AEP (GCF_038396675.1) 02 NC_088921.1 (68382921..68387357, complement)
103 previous assembly Hydra_105_v3 (GCF_022113875.1) 6 NC_061161.1 (56309405..56315076, complement)

Chromosome 02 - NC_088965.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate glucosamine 3-O-sulfotransferase 1 Neighboring gene transcriptional regulator Myc-A Neighboring gene uncharacterized LOC136082035 Neighboring gene anaphase-promoting complex subunit 2 Neighboring gene membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables estrogen response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-alpha-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037890685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HydraT2T_105 Primary Assembly

Genomic

  1. NC_088965.1 Reference HydraT2T_105 Primary Assembly

    Range
    56506005..56511777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047279756.2 → XP_047135712.1  retinoic acid receptor RXR-alpha-B

    UniProtKB/TrEMBL
    A0A8B7DEE7
    Related
    XP_047135712.1

  2. XM_012701055.3 → XP_012556509.1  retinoic acid receptor RXR-alpha-B

    UniProtKB/TrEMBL
    A0A8B7DEE7
    Related
    XP_012556509.1
    Conserved Domains (2) summary
    cd06916
    Location:206 → 276
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    cl11397
    Location:309 → 508
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  3. XM_065800577.1 → XP_065656649.1  retinoic acid receptor RXR-alpha-B

    UniProtKB/TrEMBL
    A0A8B7DEE7

Alternate HydraT2T_AEP

Genomic

  1. NC_088921.1 Alternate HydraT2T_AEP

    Range
    68382921..68387357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065791786.1 → XP_065647858.1  retinoic acid receptor RXR-alpha-B

  2. XM_065791787.1 → XP_065647859.1  retinoic acid receptor RXR-alpha-B

  3. XM_065791785.1 → XP_065647857.1  retinoic acid receptor RXR-alpha-B

Nucleotide Protein
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Molecular Biology Databases
Research Materials