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LOC100213079 NLR type 1 [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100213079, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100213079
Gene description
NLR type 1
See related
EnsemblRapid:LOC100213079
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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See LOC100213079 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Hydra_105_v3 (GCF_022113875.1) 9 NC_061164.1 (12255476..12265243)
102 previous assembly Hydra_RP_1.0 (GCF_000004095.1) Unplaced Scaffold NW_004170275.1 (49302..59072, complement)

Chromosome 9 - NC_061164.1Genomic Context describing neighboring genes Neighboring gene swi5-dependent recombination DNA repair protein 1 homolog Neighboring gene uncharacterized LOC124815332 Neighboring gene uncharacterized LOC100202539 Neighboring gene uncharacterized LOC124815359 Neighboring gene uncharacterized LOC100199803 Neighboring gene uncharacterized LOC124815166

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defining the origins of the NOD-like receptor system at the base of animal evolution. Lange C, et al. Mol Biol Evol, 2011 May. PMID 21183612

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NLR type 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280874.1 → NP_001267803.1  NLR type 1

    See identical proteins and their annotated locations for NP_001267803.1

    Status: PROVISIONAL

    Source sequence(s)
    HQ660063
    UniProtKB/TrEMBL
    F2XX00
    Related
    NP_001267803.1, NM_001280874.1
    Conserved Domains (2) summary
    cd01670
    Location:12 → 86
    Death; Death Domain: a protein-protein interaction domain
    cl21455
    Location:188 → 276
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Hydra vulgaris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hydra_105_v3 Primary Assembly

Genomic

  1. NC_061164.1 Reference Hydra_105_v3 Primary Assembly

    Range
    12255476..12265243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases