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LOC100208060 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100208060, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100208060
Gene description
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
See related
EnsemblRapid:LOC100208060
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Hydra_105_v3 (GCF_022113875.1) 1 NC_061156.1 (24168230..24169083)
102 previous assembly Hydra_RP_1.0 (GCF_000004095.1) Unplaced Scaffold NW_004168312.1 (52393..53174, complement)

Chromosome 1 - NC_061156.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124809059 Neighboring gene uncharacterized LOC100202097 Neighboring gene nucleoprotein TPR Neighboring gene uncharacterized LOC124809074 Neighboring gene sodium- and chloride-dependent transporter XTRP3A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acireductone dioxygenase [iron(II)-requiring] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-methionine salvage from methylthioadenosine IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hydra vulgaris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hydra_105_v3 Primary Assembly

Genomic

  1. NC_061156.1 Reference Hydra_105_v3 Primary Assembly

    Range
    24168230..24169083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002165131.4 → XP_002165167.1  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase

    UniProtKB/TrEMBL
    T2M5T7
    Related
    XP_002165167.1, XM_002165131.4
    Conserved Domains (1) summary
    cl21464
    Location:3 → 163
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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