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LOC100198107 SUMO-specific isopeptidase USPL1 [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100198107, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100198107
Gene description
SUMO-specific isopeptidase USPL1
See related
EnsemblRapid:LOC100198107
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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Genomic context

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Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Hydra_105_v3 (GCF_022113875.1) 12 NC_061167.1 (35604832..35632674, complement)
102 previous assembly Hydra_RP_1.0 (GCF_000004095.1) Unplaced Scaffold NW_004170423.1 (24480..38435, complement)

Chromosome 12 - NC_061167.1Genomic Context describing neighboring genes Neighboring gene kynureninase-like Neighboring gene surfeit locus protein 1 Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene golgin subfamily B member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics. Rodrigues M, et al. Biofouling, 2016 Oct. PMID 27661452, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SUMO binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Cajal body organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein desumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SUMO-specific isopeptidase USPL1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hydra vulgaris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hydra_105_v3 Primary Assembly

Genomic

  1. NC_061167.1 Reference Hydra_105_v3 Primary Assembly

    Range
    35604832..35632674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047288957.1 → XP_047144913.1  SUMO-specific isopeptidase USPL1

    Related
    XP_047144913.1, XM_047288957.1

  2. XM_002170462.4 → XP_002170498.3  SUMO-specific isopeptidase USPL1

    Related
    XP_002170498.3, XM_002170462.4
Nucleotide Protein
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