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utp25 UTP25, small subunit processor component [ Salmo salar (Atlantic salmon) ]

Gene ID: 100196189, updated on 14-Apr-2018

Summary

Gene symbol
utp25
Gene description
UTP25, small subunit processor component
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
def; diexf
Orthologs

Genomic context

See utp25 in Genome Data Viewer
Location:
chromosome: ssa09
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (27122217..27128039)

Chromosome ssa09 - NC_027308.1Genomic Context describing neighboring genes Neighboring gene probable phospholipid-transporting ATPase VD Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 Neighboring gene Yip1 domain family, member 5 Neighboring gene ornithine decarboxylase 1-like Neighboring gene nucleolar protein 10-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_027308.1 Chromosome ssa09 Reference ICSASG_v2 Primary Assembly

General protein information

Preferred Names
digestive organ expansion factor homolog
Names
digestive-organ expansion factor

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ICSASG_v2 Primary Assembly

Genomic

  1. NC_027308.1 Reference ICSASG_v2 Primary Assembly

    Range
    27122217..27128039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014211028.1XP_014066503.1  digestive organ expansion factor homolog isoform X1

    UniProtKB/TrEMBL
    A0A1S3SQ95
    Conserved Domains (2) summary
    cl14192
    Location:106185
    Phage_T7_Capsid; Phage T7 capsid assembly protein
    pfam06862
    Location:269751
    UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
  2. XM_014211029.1XP_014066504.1  digestive organ expansion factor homolog isoform X2

    UniProtKB/TrEMBL
    A0A1S3SQ78
    Conserved Domains (2) summary
    cl14192
    Location:105184
    Phage_T7_Capsid; Phage T7 capsid assembly protein
    pfam06862
    Location:268750
    UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001141218.1: Suppressed sequence

    Description
    NM_001141218.1: This RefSeq was suppressed temporarily because the encoded protein is significantly shorter than likely homologs.
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