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haox2 Hydroxyacid oxidase 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100196048, updated on 14-May-2025
Gene symbol
haox2
Gene description
Hydroxyacid oxidase 2
See related
EnsemblRapid:ENSSSAG00000059386
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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See haox2 in Genome Data Viewer
Location:
chromosome: ssa21
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa21 NC_059462.1 (30484266..30489866)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (30560634..30566287)

Chromosome ssa21 - NC_059462.1Genomic Context describing neighboring genes Neighboring gene tryptophan--tRNA ligase, mitochondrial-like Neighboring gene tryptophan--tRNA ligase, mitochondrial-like Neighboring gene uncharacterized LOC106582046 Neighboring gene Kelch-like protein 13 Neighboring gene uncharacterized LOC106582081

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FMN binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
Hydroxyacid oxidase 2; hydroxyacid oxidase 2

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001141077.1 → NP_001134549.1  Hydroxyacid oxidase 2

    See identical proteins and their annotated locations for NP_001134549.1

    Status: PROVISIONAL

    Source sequence(s)
    BT048165
    UniProtKB/TrEMBL
    A0A1S3NY56, B5XAU6
    Related
    ENSSSAP00000066199.1, ENSSSAT00000097459.2
    Conserved Domains (2) summary
    cd02809
    Location:8 → 350
    alpha_hydroxyacid_oxid_FMN; Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate ...
    pfam01070
    Location:14 → 354
    FMN_dh; FMN-dependent dehydrogenase

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059462.1 Reference Ssal_v3.1

    Range
    30484266..30489866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014164721.2 → XP_014020196.2  hydroxyacid oxidase 2 isoform X2

    UniProtKB/TrEMBL
    A0A1S3NY56

  2. XM_014164720.2 → XP_014020195.2  hydroxyacid oxidase 2 isoform X1

    UniProtKB/TrEMBL
    A0A1S3NY48
    Related
    ENSSSAP00000066184.2, ENSSSAT00000097440.2
Nucleotide Protein
Heading Accession and Version

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