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loxe3 Epidermis-type lipoxygenase 3 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100194745, updated on 3-Dec-2024

Summary

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Gene symbol
loxe3
Gene description
Epidermis-type lipoxygenase 3
See related
Ensembl:ENSSSAG00000052761
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See loxe3 in Genome Data Viewer
Location:
chromosome: ssa08
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa08 NC_059449.1 (17096494..17108242)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa08 NC_027307.1 (18278152..18290592)

Chromosome ssa08 - NC_059449.1Genomic Context describing neighboring genes Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1a Neighboring gene TBC domain-containing protein kinase-like protein Neighboring gene uncharacterized LOC106610361 Neighboring gene hydroperoxide isomerase ALOXE3-like Neighboring gene hydroperoxide isomerase ALOXE3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Epidermis-type lipoxygenase 3; epidermis-type lipoxygenase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139774.1 → NP_001133246.1  Epidermis-type lipoxygenase 3

    See identical proteins and their annotated locations for NP_001133246.1

    Status: PROVISIONAL

    Source sequence(s)
    BT044633
    UniProtKB/TrEMBL
    A0A1S3SL49, B5X0R4
    Related
    ENSSSAP00000054012.2, ENSSSAT00000083267.2
    Conserved Domains (2) summary
    pfam00305
    Location:228 → 662
    Lipoxygenase; Lipoxygenase
    cl00011
    Location:2 → 117
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059449.1 Reference Ssal_v3.1

    Range
    17096494..17108242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014209592.2 → XP_014065067.2  epidermis-type lipoxygenase 3 isoform X1

    UniProtKB/TrEMBL
    A0A1S3SL49
    Related
    ENSSSAP00000052681.2, ENSSSAT00000081611.2
Nucleotide Protein
Heading Accession and Version

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