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LOC100191928 uncharacterized LOC100191928 [ Zea mays ]

Gene ID: 100191928, updated on 27-Nov-2024

Summary

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Gene symbol
LOC100191928
Gene description
uncharacterized LOC100191928
Locus tag
ZEAMMB73_Zm00001d008495
See related
EnsemblRapid:Zm00001eb334770
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM5G875864
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Genomic context

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See LOC100191928 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (10430691..10434441, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (10370364..10374114, complement)

Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene beta-1,2-xylosyltransferase XYXT1 Neighboring gene Glycosyltransferase family 61 protein Neighboring gene putative leucine--tRNA ligase, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Alpha-1,3-arabinosyltransferase XAT3; uncharacterized protein LOC100191928
Names
Glycosyltransferase family 61 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137515.1 → NP_001130987.1  Alpha-1,3-arabinosyltransferase XAT3

    See identical proteins and their annotated locations for NP_001130987.1

    Status: PROVISIONAL

    Source sequence(s)
    BT034398
    UniProtKB/TrEMBL
    A0A804QIB3, B4FBB0
    Related
    Zm00001eb334770_P007, Zm00001eb334770_T007
    Conserved Domains (1) summary
    pfam04577
    Location:332 → 531
    DUF563; Protein of unknown function (DUF563)

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    10430691..10434441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023300725.1 → XP_023156493.1  uncharacterized protein LOC100191928 isoform X7

    UniProtKB/TrEMBL
    A0A804UFC3, A0A804UFH8
    Related
    Zm00001eb334770_P003, Zm00001eb334770_T003
    Conserved Domains (1) summary
    pfam04577
    Location:239 → 432
    DUF563; Protein of unknown function (DUF563)

  2. XM_020541851.2 → XP_020397440.1  uncharacterized protein LOC100191928 isoform X4

    UniProtKB/TrEMBL
    A0A804QIB3
    Conserved Domains (1) summary
    pfam04577
    Location:316 → 509
    DUF563; Protein of unknown function (DUF563)

  3. XM_008656041.3 → XP_008654263.1  uncharacterized protein LOC100191928 isoform X2

    See identical proteins and their annotated locations for XP_008654263.1

    UniProtKB/TrEMBL
    A0A804QIB3, A0A804QJV0
    Related
    Zm00001eb334770_P004, Zm00001eb334770_T004
    Conserved Domains (1) summary
    pfam04577
    Location:348 → 541
    DUF563; Protein of unknown function (DUF563)

  4. XM_008656040.3 → XP_008654262.1  uncharacterized protein LOC100191928 isoform X1

    UniProtKB/TrEMBL
    A0A804QIB3, A0A804QJU6
    Related
    Zm00001eb334770_P002, Zm00001eb334770_T002
    Conserved Domains (1) summary
    pfam04577
    Location:352 → 545
    DUF563; Protein of unknown function (DUF563)

  5. XM_035961265.1 → XP_035817158.1  uncharacterized protein LOC100191928 isoform X5

    UniProtKB/TrEMBL
    A0A804QIB3
    Conserved Domains (1) summary
    pfam04577
    Location:300 → 499
    DUF563; Protein of unknown function (DUF563)

  6. XM_008656042.4 → XP_008654264.1  uncharacterized protein LOC100191928 isoform X3

    UniProtKB/TrEMBL
    A0A804QIB3, A0A804QL35
    Related
    Zm00001eb334770_P006, Zm00001eb334770_T006
    Conserved Domains (1) summary
    pfam04577
    Location:336 → 529
    DUF563; Protein of unknown function (DUF563)

  7. XM_035961266.1 → XP_035817159.1  uncharacterized protein LOC100191928 isoform X8

    UniProtKB/TrEMBL
    A0A3L6DN88
    Conserved Domains (1) summary
    pfam04577
    Location:226 → 425
    DUF563; Protein of unknown function (DUF563)

  8. XM_020541852.2 → XP_020397441.1  uncharacterized protein LOC100191928 isoform X6

    UniProtKB/TrEMBL
    A0A804QIB3
    Conserved Domains (1) summary
    pfam04577
    Location:242 → 435
    DUF563; Protein of unknown function (DUF563)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001137352.1: Suppressed sequence

    Description
    NM_001137352.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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