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LOC100191631 beta-galactosidase [ Zea mays ]

Gene ID: 100191631, updated on 27-Nov-2024

Summary

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Gene symbol
LOC100191631
Gene description
beta-galactosidase
Locus tag
ZEAMMB73_Zm00001d046357
See related
EnsemblRapid:Zm00001eb385210
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G027385; GRMZM2G081583
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Genomic context

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See LOC100191631 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (85828345..85832365)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (83802019..83806039)

Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene cytokinin oxidase9 Neighboring gene uncharacterized LOC103638620 Neighboring gene uncharacterized LOC100193075 Neighboring gene uncharacterized LOC100274875

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase
NP_001130532.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137060.1 → NP_001130532.1  beta-galactosidase precursor

    See identical proteins and their annotated locations for NP_001130532.1

    Status: PROVISIONAL

    Source sequence(s)
    BT033779
    UniProtKB/TrEMBL
    A0A3L6D9E5, B4F9J1, B6T0D0
    Related
    Zm00001eb385210_P001, Zm00001eb385210_T001
    Conserved Domains (1) summary
    cl26201
    Location:22 → 721
    GanA; Beta-galactosidase GanA [Carbohydrate transport and metabolism]

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    85828345..85832365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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