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LOC100191390 uncharacterized LOC100191390 [ Zea mays ]

Gene ID: 100191390, updated on 27-Nov-2024

Summary

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Gene symbol
LOC100191390
Gene description
uncharacterized LOC100191390
Locus tag
ZEAMMB73_Zm00001d034015
See related
EnsemblRapid:Zm00001eb057230
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
exg1; GRMZM2G147687
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Genomic context

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See LOC100191390 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (282959279..282964571)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (281226739..281232031)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100279262 Neighboring gene uncharacterized LOC103644007 Neighboring gene uncharacterized LOC103644008 Neighboring gene uncharacterized LOC541703 Neighboring gene uncharacterized LOC109943548 Neighboring gene serine/threonine-protein kinase TOUSLED

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  2. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  4. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized LOC100191390; uncharacterized protein LOC100191390
Names
PCO090119
exoglucanase 1
exoglucanase1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136824.1 → NP_001130296.1  uncharacterized LOC100191390 precursor

    See identical proteins and their annotated locations for NP_001130296.1

    Status: PROVISIONAL

    Source sequence(s)
    BT033466
    UniProtKB/TrEMBL
    B4F8M8, Q9LLB8
    Related
    Zm00001eb057230_P002, Zm00001eb057230_T002
    Conserved Domains (1) summary
    cl27622
    Location:38 → 617
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    282959279..282964571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008666556.2 → XP_008664778.1  uncharacterized protein LOC100191390 isoform X2

    See identical proteins and their annotated locations for XP_008664778.1

    UniProtKB/TrEMBL
    B4F8M8, Q9LLB8
    Related
    Zm00001eb057230_P006, Zm00001eb057230_T006
    Conserved Domains (1) summary
    cl27622
    Location:38 → 617
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

  2. XM_008666500.4 → XP_008664722.1  uncharacterized protein LOC100191390 isoform X1

    See identical proteins and their annotated locations for XP_008664722.1

    UniProtKB/TrEMBL
    A0A1D6L4E9, Q9LLB8
    Conserved Domains (1) summary
    cl27622
    Location:73 → 652
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
Nucleotide Protein
Heading Accession and Version

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