Format

Send to:

Choose Destination

C5orf52 chromosome 5 open reading frame 52 [ Homo sapiens (human) ]

Gene ID: 100190949, updated on 17-Jun-2019

Summary

Official Symbol
C5orf52provided by HGNC
Official Full Name
chromosome 5 open reading frame 52provided by HGNC
Primary source
HGNC:HGNC:35121
See related
Ensembl:ENSG00000187658
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 8.9), colon (RPKM 1.5) and 2 other tissues See more
Orthologs

Genomic context

See C5orf52 in Genome Data Viewer
Location:
5q33.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (157670399..157680176)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (157098561..157107162)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 390, pseudogene Neighboring gene SRY-box transcription factor 30 Neighboring gene uncharacterized LOC105377675 Neighboring gene Sharpr-MPRA regulatory region 8057 Neighboring gene Sharpr-MPRA regulatory region 5199 Neighboring gene SOX30 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

General protein information

Preferred Names
uncharacterized protein C5orf52

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145132.2NP_001138604.1  uncharacterized protein C5orf52

    See identical proteins and their annotated locations for NP_001138604.1

    Status: VALIDATED

    Source sequence(s)
    AC008694, AI187821, BG721329
    Consensus CDS
    CCDS47329.1
    UniProtKB/Swiss-Prot
    A6NGY3
    Related
    ENSP00000387027.3, ENST00000409999.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    157670399..157680176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011534416.2XP_011532718.1  uncharacterized protein C5orf52 isoform X1

    See identical proteins and their annotated locations for XP_011532718.1

    UniProtKB/Swiss-Prot
    A6NGY3
  2. XM_017008909.2XP_016864398.1  uncharacterized protein C5orf52 isoform X2

Support Center