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TRT-CGT4-1 tRNA-Thr (anticodon CGT) 4-1 [ Homo sapiens (human) ]

Gene ID: 100189245, updated on 10-Oct-2023

Summary

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Official Symbol
TRT-CGT4-1provided by HGNC
Official Full Name
tRNA-Thr (anticodon CGT) 4-1provided by HGNC
Primary source
HGNC:HGNC:34808
See related
AllianceGenome:HGNC:34808
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAT10
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Genomic context

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Location:
17q11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (31550074..31550145)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (32495839..32495910)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (29877093..29877164)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene RAB11 family interacting protein 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:29850121-29850755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:29851414-29852028 Neighboring gene Sharpr-MPRA regulatory region 11348 Neighboring gene RNA, 7SL, cytoplasmic 45, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12016 Neighboring gene microRNA 4724 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8412 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:29884070-29884694 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:29886028-29886818 Neighboring gene RNA, U6atac small nuclear 7, pseudogene Neighboring gene microRNA 193a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Thr-CGT-4-1
  • transfer RNA threonine 10 (anticodon CGU)
  • transfer RNA-Thr (CGT) 4-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    31550074..31550145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    32495839..32495910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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