Format

Send to:

Choose Destination

SH3TC1 SH3 domain and tetratricopeptide repeats 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100188898, updated on 14-Oct-2018

Summary

Gene symbol
SH3TC1
Gene description
SH3 domain and tetratricopeptide repeats 1
Locus tag
CR201_G0040812
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs

Genomic context

See SH3TC1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Susie_PABv2 (GCF_002880775.1) 4 NC_036907.1 (4627157..4670327, complement)
102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 4 NC_012595.1 (4909751..4914472, complement) , (4886144..4906586, complement) , (4880202..4882737, complement)

Chromosome 4 - NC_036907.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene acyl-CoA oxidase 3, pristanoyl Neighboring gene HtrA serine peptidase 3 Neighboring gene actin binding LIM protein family member 2 Neighboring gene basic proline-rich protein Neighboring gene actin filament associated protein 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
SH3 domain and tetratricopeptide repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134679.1NP_001128151.1  SH3 domain and tetratricopeptide repeat-containing protein 1

    See identical proteins and their annotated locations for NP_001128151.1

    Status: PROVISIONAL

    Source sequence(s)
    CR857951
    UniProtKB/TrEMBL
    Q5RDG0
    Conserved Domains (3) summary
    cd11885
    Location:309363
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:11531180
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11521224
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Susie_PABv2 Primary Assembly

Genomic

  1. NC_036907.1 Reference Susie_PABv2 Primary Assembly

    Range
    4627157..4670327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024245664.1XP_024101432.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (3) summary
    cd11885
    Location:190244
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:10341061
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:10371105
    TPR_12; Tetratricopeptide repeat
Support Center