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capzb beta-actinin II [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100181273, updated on 21-Dec-2023
Gene symbol
capzb
Gene description
beta-actinin II
See related
Ensembl:ENSCING00000005895
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
CapZ-beta
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See capzb in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 1 NC_020166.2 (8661266..8666719, complement)

Chromosome 1 - NC_020166.2Genomic Context describing neighboring genes Neighboring gene heparan sulfate glucosamine 3-O-sulfotransferase 1-like Neighboring gene homologous-pairing protein 2 homolog Neighboring gene myoplasmin-C1 Neighboring gene O(6)-methylguanine-induced apoptosis 2-like Neighboring gene 39S ribosomal protein L22, mitochondrial-like Neighboring gene zinc finger (C2H2)-89 Neighboring gene uncharacterized LOC100186817

Genomic Sequence:
NC_020166.2 Chromosome 1 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Actin capping proteins, CapZ (β-actinin) and tropomodulin in amphioxus striated muscle. Bao Y, et al. Gene, 2012 Nov 15. PMID 22951807
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in barbed-end actin filament capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of filopodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of F-actin capping protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC100181273

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001278953.1 → NP_001265882.1  uncharacterized protein LOC100181273

    See identical proteins and their annotated locations for NP_001265882.1

    Status: PREDICTED

    Source sequence(s)
    AB736189
    UniProtKB/TrEMBL
    A0A1W2VXN4, F6SHZ7, H2XUY4
    Related
    ENSCINP00000033468, ENSCINT00000036537
    Conserved Domains (1) summary
    pfam01115
    Location:11 → 240
    F_actin_cap_B; F-actin capping protein, beta subunit

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020166.2 Reference KH Primary Assembly

    Range
    8661266..8666719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026833621.1 → XP_026689422.1  uncharacterized protein LOC100181273 isoform X1

    UniProtKB/TrEMBL
    F6SHZ7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials