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LOC100180543 agmatinase, mitochondrial-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100180543, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100180543
Gene description
agmatinase, mitochondrial-like
See related
Ensembl:ENSCING00000009493
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100180543 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 2 NC_020167.2 (3344659..3347659, complement)

Chromosome 2 - NC_020167.2Genomic Context describing neighboring genes Neighboring gene testin Neighboring gene agmatinase, mitochondrial Neighboring gene UPF0561 protein C2orf68 homolog Neighboring gene galactocerebrosidase Neighboring gene solute carrier family 22 member 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020167.2 Chromosome 2 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables agmatinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in putrescine biosynthetic process from arginine, using agmatinase IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agmatinase, mitochondrial-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020167.2 Reference KH Primary Assembly

    Range
    3344659..3347659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002122623.4 → XP_002122659.1  agmatinase, mitochondrial-like isoform X1

    UniProtKB/TrEMBL
    F7ADG5
    Related
    ENSCINP00000021849
    Conserved Domains (1) summary
    cd11592
    Location:44 → 332
    Agmatinase_PAH; Agmatinase-like family includes proclavaminic acid amidinohydrolase

  2. XM_026840493.1 → XP_026696294.1  agmatinase, mitochondrial-like isoform X2

    UniProtKB/TrEMBL
    F7ADG5
    Conserved Domains (1) summary
    cd11592
    Location:1 → 285
    Agmatinase_PAH; Agmatinase-like family includes proclavaminic acid amidinohydrolase
Nucleotide Protein
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