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LOC100179479 arachidonate 5-lipoxygenase-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100179479, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100179479
Gene description
arachidonate 5-lipoxygenase-like
See related
Ensembl:ENSCING00000007740
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100179479 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 10 NC_020175.2 (4290605..4296832)

Chromosome 10 - NC_020175.2Genomic Context describing neighboring genes Neighboring gene protein NipSnap homolog 1 Neighboring gene adhesion G-protein coupled receptor G7-like Neighboring gene oxygen-dependent choline dehydrogenase-like Neighboring gene uncharacterized LOC101242849 Neighboring gene nucleoporin nup124-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020175.2 Chromosome 10 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arachidonate 5-lipoxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020175.2 Reference KH Primary Assembly

    Range
    4290605..4296832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002123777.5 → XP_002123813.5  arachidonate 5-lipoxygenase-like

    UniProtKB/TrEMBL
    F6Z015
    Conserved Domains (2) summary
    cl00011
    Location:29 → 131
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl27717
    Location:235 → 696
    Lipoxygenase
Nucleotide Protein
Heading Accession and Version

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Research Materials