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ARPC5L actin related protein 2/3 complex subunit 5 like [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100173958, updated on 26-Mar-2024

Summary

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Gene symbol
ARPC5L
Gene description
actin related protein 2/3 complex subunit 5 like
Locus tag
CR201_G0043532
See related
Ensembl:ENSPPYG00000019604
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 13 NC_071998.2 (116157351..116172115)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 9 NC_071994.1 (100558727..100572666)

Chromosome 13 - NC_071998.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129048012 Neighboring gene olfactomedin like 2A Neighboring gene WD repeat domain 38 Neighboring gene U4 spliceosomal RNA Neighboring gene ribosomal protein L35 Neighboring gene golgin A1 Neighboring gene uncharacterized LOC129048015 Neighboring gene suppressor of cancer cell invasion

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp459G233

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Arp2/3 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-related protein 2/3 complex subunit 5-like protein
Names
ARC16-2
arp2/3 complex 16 kDa subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001133468.1 → NP_001126940.1  actin-related protein 2/3 complex subunit 5-like protein

    See identical proteins and their annotated locations for NP_001126940.1

    Status: PROVISIONAL

    Source sequence(s)
    CR861225
    UniProtKB/Swiss-Prot
    Q5R4M1
    UniProtKB/TrEMBL
    A0A2J8SFR1, H2PTD8
    Related
    ENSPPYP00000021968.2, ENSPPYT00000022875.2
    Conserved Domains (1) summary
    pfam04699
    Location:9 → 151
    P16-Arc; ARP2/3 complex 16 kDa subunit (p16-Arc)

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071998.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    116157351..116172115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054519508.2 → XP_054375483.1  actin-related protein 2/3 complex subunit 5-like protein isoform X1

  2. XM_063713907.1 → XP_063569977.1  actin-related protein 2/3 complex subunit 5-like protein isoform X2

  3. XM_054519510.2 → XP_054375485.1  actin-related protein 2/3 complex subunit 5-like protein isoform X3

RNA

  1. XR_008509461.2 RNA Sequence

  2. XR_010136424.1 RNA Sequence

  3. XR_008509460.2 RNA Sequence

  4. XR_008509462.2 RNA Sequence

  5. XR_010136427.1 RNA Sequence

  6. XR_008509467.2 RNA Sequence

  7. XR_008509469.2 RNA Sequence

  8. XR_010136426.1 RNA Sequence

  9. XR_010136425.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R4M1.1 GenPept UniProtKB/Swiss-Prot:Q5R4M1

Gene LinkOut

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