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VPS72 vacuolar protein sorting 72 homolog [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100173671, updated on 26-Mar-2024

Summary

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Gene symbol
VPS72
Gene description
vacuolar protein sorting 72 homolog
Locus tag
CR201_G0018904
See related
Ensembl:ENSPPYG00000000873
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as
TCFL1
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 1 NC_071985.2 (99473429..99494636)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 1 NC_071985.1 (99469009..99490216)

Chromosome 1 - NC_071985.2Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit ubiquitin receptor, non-ATPase 4 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 alpha Neighboring gene tropomodulin 4 Neighboring gene sodium channel modifier 1 Neighboring gene LysM domain containing 1 Neighboring gene TNF alpha induced protein 8 like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp459I1427

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent H2AZ histone chaperone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 72 homolog
Names
transcription factor-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001133199.1 → NP_001126671.1  vacuolar protein sorting-associated protein 72 homolog

    See identical proteins and their annotated locations for NP_001126671.1

    Status: PROVISIONAL

    Source sequence(s)
    CR860743
    UniProtKB/Swiss-Prot
    Q5R5V9
    UniProtKB/TrEMBL
    A0A2J8VF03, A0A2J8VF04
    Related
    ENSPPYP00000001020.2, ENSPPYT00000001054.3
    Conserved Domains (2) summary
    pfam05764
    Location:7 → 216
    YL1; YL1 nuclear protein
    pfam08265
    Location:291 → 319
    YL1_C; YL1 nuclear protein C-terminal domain

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    99473429..99494636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R5V9.1 GenPept UniProtKB/Swiss-Prot:Q5R5V9

Gene LinkOut

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