RPAP2 RNA polymerase II associated protein 2 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: RPAP2
Gene description: RNA polymerase II associated protein 2
Locus tag: CR201_G0020048
See related: Ensembl:ENSPPYG00000001154
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	1	NC_071985.2 (140545049..140683174, complement)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	1	NC_071985.1 (140551951..140690070, complement)

Chromosome 1 - NC_071985.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH69967 (e-PCR)
- UniSTS:64852

RH123904 (e-PCR)
- UniSTS:136279

SHGC-31200 (e-PCR)
- UniSTS:56423

RH103075 (e-PCR)
- UniSTS:97409

AL033567 (e-PCR)
- UniSTS:94170

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase core enzyme binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2

NP_001125811.1

EC 3.1.3.16

XP_009245911.2

EC 3.1.3.16

XP_009245916.2

EC 3.1.3.16

XP_054375526.1

EC 3.1.3.16

XP_054375580.1

EC 3.1.3.16

XP_054375610.1

EC 3.1.3.16

XP_054375678.1

EC 3.1.3.16

XP_063567671.1

EC 3.1.3.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001132339.1 → NP_001125811.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2

See identical proteins and their annotated locations for NP_001125811.1

Status: PROVISIONAL

Source sequence(s)

CR859185

UniProtKB/Swiss-Prot

Q5RA37

UniProtKB/TrEMBL

A0A2J8VCX6, A0A6D2W1E2, H2N6S2

Related

ENSPPYP00000001338.2, ENSPPYT00000001383.3

Conserved Domains (1) summary

pfam04181
Location:80 → 152

RPAP2_Rtr1; Rtr1/RPAP2 family

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

140545049..140683174 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009247636.4 → XP_009245911.2 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X2
XM_063711601.1 → XP_063567671.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X7
XM_054519551.2 → XP_054375526.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1
XM_054519703.2 → XP_054375678.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X6
XM_009247641.4 → XP_009245916.2 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X5
XM_054519635.2 → XP_054375610.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X4
XM_054519605.2 → XP_054375580.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X3