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LOC100167859 SOX domain-containing protein dichaete-like [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100167859, updated on 7-Dec-2023
Gene symbol
LOC100167859
Gene description
SOX domain-containing protein dichaete-like
See related
APHIDBASE:ACYPI008614; EnsemblRapid:LOC100167859
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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See LOC100167859 in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) X NC_042493.1 (71179870..71182599)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383913.1 (183186..185717)

Chromosome X - NC_042493.1Genomic Context describing neighboring genes Neighboring gene transcription factor SOX-2-like Neighboring gene tubulin alpha-4 chain Neighboring gene uncharacterized LOC115034007 Neighboring gene uncharacterized LOC115034006

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
SOX domain-containing protein dichaete-like

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042493.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    71179870..71182599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001952740.5 → XP_001952775.1  SOX domain-containing protein dichaete-like

    UniProtKB/TrEMBL
    A0A8R1W6Z0
    Related
    XP_001952775.1, XM_001952740.5
    Conserved Domains (1) summary
    cd01388
    Location:70 → 141
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
Nucleotide Protein
Heading Accession and Version

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