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SNX16 sorting nexin 16 [ Sus scrofa (pig) ]

Gene ID: 100157914, updated on 2-Oct-2018

Summary

Gene symbol
SNX16
Gene description
sorting nexin 16
See related
Ensembl:ENSSSCG00000006151
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 3.5), ovary (RPKM 3.4) and 8 other tissues See more
Orthologs

Genomic context

See SNX16 in Genome Data Viewer
Location:
4; 4
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (54801363..54837986)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (60038128..60074745, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene pyridoxal phosphate phosphatase PHOSPHO2-like Neighboring gene uncharacterized LOC110260267 Neighboring gene charged multivesicular body protein 4C Neighboring gene zinc finger AN1-type containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    54801363..54837986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001926702.5XP_001926737.1  sorting nexin-16 isoform X1

    UniProtKB/TrEMBL
    F1RXA2
    Related
    ENSSSCP00000006562.2, ENSSSCT00000006745.3
    Conserved Domains (1) summary
    cd07276
    Location:107216
    PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
  2. XM_013988064.2XP_013843518.1  sorting nexin-16 isoform X2

    UniProtKB/TrEMBL
    A0A286ZQP5
    Related
    ENSSSCP00000033934.1, ENSSSCT00000060128.1
    Conserved Domains (1) summary
    cd07276
    Location:78187
    PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
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