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RBM20 RNA binding motif protein 20 [ Sus scrofa (pig) ]

Gene ID: 100157563, updated on 1-Mar-2025

Summary

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Gene symbol
RBM20
Gene description
RNA binding motif protein 20
See related
Ensembl:ENSSSCG00000010626 RGD:13853922
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in heart (RPKM 14.9), longissimus dorsi muscle (RPKM 3.6) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RBM20 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (121058896..121269824)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (131944861..132146766)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit beta, mitochondrial pseudogene Neighboring gene structural maintenance of chromosomes 3 Neighboring gene programmed cell death 4 Neighboring gene BBSome interacting protein 1 Neighboring gene SHOC2 leucine rich repeat scaffold protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Dysregulated ribonucleoprotein granules promote cardiomyopathy in RBM20 gene-edited pigs. Schneider JW, et al. Nat Med, 2020 Nov. PMID 33188278, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dysregulated ribonucleoprotein granules promote cardiomyopathy in RBM20 gene-edited pigs.
    Title: Dysregulated ribonucleoprotein granules promote cardiomyopathy in RBM20 gene-edited pigs.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: RNA-binding protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    121058896..121269824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021073215.1 → XP_020928874.1  LOW QUALITY PROTEIN: RNA-binding protein 20

    UniProtKB/Swiss-Prot
    P0DW16
    UniProtKB/TrEMBL
    A0A4X1TE33
    Related
    ENSSSCP00000075782.1, ENSSSCT00000025671.4
    Conserved Domains (4) summary
    smart00451
    Location:1155 → 1189
    ZnF_U1; U1-like zinc finger
    cd12685
    Location:520 → 595
    RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
    pfam07263
    Location:721 → 895
    DMP1; Dentin matrix protein 1 (DMP1)
    cl26809
    Location:157 → 363
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
Nucleotide Protein
Heading Accession and Version

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