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ABCA4 ATP binding cassette subfamily A member 4 [ Sus scrofa (pig) ]

Gene ID: 100155583, updated on 26-Jun-2026
Official Symbol
ABCA4provided by VGNC
Official Full Name
ATP binding cassette subfamily A member 4provided by VGNC
Primary source
VGNC:VGNC:84948
See related
Ensembl:ENSSSCG00000006890 RGD:13952366
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 3.8), kidney (RPKM 0.9) and 5 other tissues See more
Orthologs
all
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Try the new Transcripts and proteins table
See ABCA4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
53
Annotation release Status Assembly Chr Location
RS_2026_06 current Sscrofa_HxYL_maternal_Yorkshire_Landrace_v2.0 (GCF_054392235.1) 4 NC_139386.1 (128496087..128652832)
106 previous assembly Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (123202720..123333044)

Chromosome 4 - NC_139386.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 29 Neighboring gene uncharacterized LOC146404250 Neighboring gene uncharacterized LOC146404251 Neighboring gene uncharacterized LOC146404252 Neighboring gene poly(rC)-binding protein 1-like Neighboring gene glutamate-cysteine ligase modifier subunit

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid carrier activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
retinal-specific phospholipid-transporting ATPase ABCA4
Names
ABC transporter

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_054392235.1-RS_2026_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa_HxYL_maternal_Yorkshire_Landrace_v2.0

Genomic

  1. NC_139386.1 Reference Sscrofa_HxYL_maternal_Yorkshire_Landrace_v2.0

    Range
    128496087..128652832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_085023903.1 → XP_084880029.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X4

  2. XM_085023904.1 → XP_084880030.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X5

  3. XM_085023906.1 → XP_084880032.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X7

  4. XM_085023901.1 → XP_084880027.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X2

  5. XM_085023905.1 → XP_084880031.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X6

  6. XM_085023908.1 → XP_084880034.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X9

  7. XM_085023909.1 → XP_084880035.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X10

  8. XM_085023900.1 → XP_084880026.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X1

  9. XM_085023902.1 → XP_084880028.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X3

  10. XM_085023907.1 → XP_084880033.1  retinal-specific phospholipid-transporting ATPase ABCA4 isoform X8

Nucleotide Protein
Heading Accession and Version

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