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STAG2 STAG2 cohesin complex component [ Sus scrofa (pig) ]

Gene ID: 100154944, updated on 8-Mar-2024

Summary

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Official Symbol
STAG2provided by VGNC
Official Full Name
STAG2 cohesin complex componentprovided by VGNC
Primary source
VGNC:VGNC:93525
See related
Ensembl:ENSSSCG00000012642
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 19.9), spleen (RPKM 19.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
38
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (101476117..101617405)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (116293177..116433500)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257848 Neighboring gene partitioning defective 6 homolog beta pseudogene Neighboring gene X-linked inhibitor of apoptosis Neighboring gene uncharacterized LOC106507032 Neighboring gene TEX13 family member C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cohesin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cohesin subunit SA-2
Names
stromal antigen 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    101476117..101617405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013986403.2 → XP_013841857.1  cohesin subunit SA-2 isoform X1

    UniProtKB/TrEMBL
    A0A287AZR8, A0A480LD79, A0A4X1W1U2, A0A4X1W6T1, A0A4X1W6T5, A0A8D0K0A2
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  2. XM_021080228.1 → XP_020935887.1  cohesin subunit SA-2 isoform X2

    UniProtKB/TrEMBL
    A0A286ZJX5, A0A4X1W7Y7, A0A8D1SFE0, A0A8D1TLJ0
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  3. XM_021080225.1 → XP_020935884.1  cohesin subunit SA-2 isoform X2

    UniProtKB/TrEMBL
    A0A286ZJX5, A0A4X1W7Y7, A0A8D1SFE0, A0A8D1TLJ0
    Related
    ENSSSCP00000076982.1, ENSSSCT00000094613.1
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  4. XM_005673884.3 → XP_005673941.1  cohesin subunit SA-2 isoform X1

    See identical proteins and their annotated locations for XP_005673941.1

    UniProtKB/TrEMBL
    A0A287AZR8, A0A480LD79, A0A4X1W1U2, A0A4X1W6T1, A0A4X1W6T5, A0A8D0K0A2
    Related
    ENSSSCP00000049393.1, ENSSSCT00000048514.3
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  5. XM_021080231.1 → XP_020935890.1  cohesin subunit SA-2 isoform X4

    UniProtKB/TrEMBL
    A0A4X1W7N2, A0A8D1VRI9
    Conserved Domains (1) summary
    pfam08514
    Location:88 → 196
    STAG; STAG domain

  6. XM_021080229.1 → XP_020935888.1  cohesin subunit SA-2 isoform X3

    UniProtKB/TrEMBL
    A0A8D0XTM0
    Conserved Domains (1) summary
    pfam08514
    Location:88 → 196
    STAG; STAG domain

  7. XM_005673885.3 → XP_005673942.1  cohesin subunit SA-2 isoform X1

    See identical proteins and their annotated locations for XP_005673942.1

    UniProtKB/TrEMBL
    A0A287AZR8, A0A480LD79, A0A4X1W1U2, A0A4X1W6T1, A0A4X1W6T5, A0A8D0K0A2
    Related
    ENSSSCP00000081288.1, ENSSSCT00000103423.1
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  8. XM_005673887.3 → XP_005673944.1  cohesin subunit SA-2 isoform X1

    See identical proteins and their annotated locations for XP_005673944.1

    UniProtKB/TrEMBL
    A0A287AZR8, A0A480LD79, A0A4X1W1U2, A0A4X1W6T1, A0A4X1W6T5, A0A8D0K0A2
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  9. XM_021080227.1 → XP_020935886.1  cohesin subunit SA-2 isoform X2

    UniProtKB/TrEMBL
    A0A286ZJX5, A0A4X1W7Y7, A0A8D1SFE0, A0A8D1TLJ0
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  10. XM_013986402.2 → XP_013841856.1  cohesin subunit SA-2 isoform X1

    UniProtKB/TrEMBL
    A0A287AZR8, A0A480LD79, A0A4X1W1U2, A0A4X1W6T1, A0A4X1W6T5, A0A8D0K0A2
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  11. XM_013986404.2 → XP_013841858.1  cohesin subunit SA-2 isoform X2

    UniProtKB/TrEMBL
    A0A286ZJX5, A0A4X1W7Y7, A0A8D1SFE0, A0A8D1TLJ0
    Related
    ENSSSCP00000031263.2, ENSSSCT00000051232.2
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  12. XM_021080224.1 → XP_020935883.1  cohesin subunit SA-2 isoform X1

    UniProtKB/TrEMBL
    A0A287AZR8, A0A480LD79, A0A4X1W1U2, A0A4X1W6T1, A0A4X1W6T5, A0A8D0K0A2
    Related
    ENSSSCP00000013441.4, ENSSSCT00000013823.5
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  13. XM_021080226.1 → XP_020935885.1  cohesin subunit SA-2 isoform X2

    UniProtKB/TrEMBL
    A0A286ZJX5, A0A4X1W7Y7, A0A8D1SFE0, A0A8D1TLJ0
    Conserved Domains (1) summary
    pfam08514
    Location:157 → 265
    STAG; STAG domain

  14. XM_021080232.1 → XP_020935891.1  cohesin subunit SA-2 isoform X4

    UniProtKB/TrEMBL
    A0A4X1W7N2, A0A8D1VRI9
    Related
    ENSSSCP00000029979.3, ENSSSCT00000033242.4
    Conserved Domains (1) summary
    pfam08514
    Location:88 → 196
    STAG; STAG domain

  15. XM_021080230.1 → XP_020935889.1  cohesin subunit SA-2 isoform X3

    UniProtKB/TrEMBL
    A0A8D0XTM0
    Conserved Domains (1) summary
    pfam08514
    Location:88 → 196
    STAG; STAG domain
Nucleotide Protein
Heading Accession and Version

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