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RWDD1 RWD domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 100153343, updated on 8-Mar-2024

Summary

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Official Symbol
RWDD1provided by VGNC
Official Full Name
RWD domain containing 1provided by VGNC
Primary source
VGNC:VGNC:104051
See related
Ensembl:ENSSSCG00000004446
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in psoas major muscle (RPKM 48.8), longissimus dorsi muscle (RPKM 48.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (82161371..82180325)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (92384856..92403427)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene calcium homeostasis modulator family member 6 Neighboring gene trafficking protein particle complex subunit 3L Neighboring gene calcium homeostasis modulator family member 5 Neighboring gene calcium homeostasis modulator family member 4 Neighboring gene uncharacterized LOC102162764 Neighboring gene amine sulfotransferase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RWD domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    82161371..82180325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928520.6 → XP_001928555.1  RWD domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A481CX64, A0A4X1V7T1, A0A8D1B8A6, F1RX91
    Related
    ENSSSCP00000004795.2, ENSSSCT00000004911.5
    Conserved Domains (2) summary
    pfam05773
    Location:3 → 111
    RWD; RWD domain
    pfam16543
    Location:144 → 197
    DFRP_C; DRG Family Regulatory Proteins, Tma46

  2. XM_005659401.3 → XP_005659458.1  RWD domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1V2K3
    Conserved Domains (1) summary
    pfam16543
    Location:48 → 101
    DFRP_C; DRG Family Regulatory Proteins, Tma46
Nucleotide Protein
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Gene LinkOut

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