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RAP1A RAP1A, member of RAS oncogene family [ Sus scrofa (pig) ]

Gene ID: 100153199, updated on 8-Mar-2024

Summary

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Official Symbol
RAP1Aprovided by VGNC
Official Full Name
RAP1A, member of RAS oncogene familyprovided by VGNC
Primary source
VGNC:VGNC:92084
See related
Ensembl:ENSSSCG00000006785
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 63.9), lung (RPKM 43.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (108675537..108750952, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (118823007..118897253, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 20 Neighboring gene inka box actin regulator 2 Neighboring gene 40S ribosomal protein S21 pseudogene Neighboring gene transmembrane and immunoglobulin domain containing 3 Neighboring gene adenosine A3 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. The adult boar testicular and epididymal transcriptomes. Guyonnet B, et al. BMC Genomics, 2009 Aug 7. PMID 19664223, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rap protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to cAMP IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of synaptic vesicle exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rap-1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    108675537..108750952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021090035.1 → XP_020945694.1  ras-related protein Rap-1A isoform X3

    Conserved Domains (1) summary
    cl38936
    Location:1 → 116
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_003355241.4 → XP_003355289.1  ras-related protein Rap-1A isoform X1

    See identical proteins and their annotated locations for XP_003355289.1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  3. XM_021090029.1 → XP_020945688.1  ras-related protein Rap-1A isoform X1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  4. XM_013997264.2 → XP_013852718.1  ras-related protein Rap-1A isoform X2

    UniProtKB/TrEMBL
    A0A8D2C8C9
    Conserved Domains (1) summary
    cl38936
    Location:13 → 163
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_001928649.6 → XP_001928684.1  ras-related protein Rap-1A isoform X1

    See identical proteins and their annotated locations for XP_001928684.1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Related
    ENSSSCP00000050852.1, ENSSSCT00000054681.3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  6. XM_021090030.1 → XP_020945689.1  ras-related protein Rap-1A isoform X1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  7. XM_021090031.1 → XP_020945690.1  ras-related protein Rap-1A isoform X1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  8. XM_021090033.1 → XP_020945692.1  ras-related protein Rap-1A isoform X1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  9. XM_021090034.1 → XP_020945693.1  ras-related protein Rap-1A isoform X1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms

  10. XM_021090032.1 → XP_020945691.1  ras-related protein Rap-1A isoform X1

    UniProtKB/TrEMBL
    A0A4X1TAH5, A0A8D0JE49, A0A8D0MI93, A0A8D1SXU6, F2Z5K3
    Conserved Domains (1) summary
    cd04175
    Location:3 → 167
    Rap1; Rap1 family GTPase consists of Rap1a and Rap1b isoforms
Nucleotide Protein
Heading Accession and Version

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