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DCC DCC netrin 1 receptor [ Sus scrofa (pig) ]

Gene ID: 100152102, updated on 8-Mar-2024

Summary

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Official Symbol
DCCprovided by VGNC
Official Full Name
DCC netrin 1 receptorprovided by VGNC
Primary source
VGNC:VGNC:103078
See related
Ensembl:ENSSSCG00000040836
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 1.6), mixtures (RPKM 0.1) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See DCC in Genome Data Viewer
Location:
chromosome: 1
Exon count:
35
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (101518629..103087021)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (112538098..112878669)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256982 Neighboring gene protein NipSnap homolog 3A pseudogene Neighboring gene 40S ribosomal protein S18 pseudogene Neighboring gene uncharacterized LOC106508959

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin receptor DCC
Names
deleted in colorectal carcinoma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    101518629..103087021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021073445.1 → XP_020929104.1  netrin receptor DCC isoform X1

    UniProtKB/TrEMBL
    A0A8W4FD29
    Conserved Domains (7) summary
    cd05722
    Location:41 → 136
    Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
    smart00408
    Location:153 → 219
    IGc2; Immunoglobulin C-2 Type
    smart00060
    Location:726 → 805
    FN3; Fibronectin type 3 domain
    cd00063
    Location:429 → 521
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:241 → 327
    I-set; Immunoglobulin I-set domain
    pfam06583
    Location:1148 → 1443
    Neogenin_C; Neogenin C-terminus
    cl11960
    Location:347 → 417
    Ig; Immunoglobulin domain

  2. XM_021073448.1 → XP_020929107.1  netrin receptor DCC isoform X1

    UniProtKB/TrEMBL
    A0A8W4FD29
    Conserved Domains (7) summary
    cd05722
    Location:41 → 136
    Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
    smart00408
    Location:153 → 219
    IGc2; Immunoglobulin C-2 Type
    smart00060
    Location:726 → 805
    FN3; Fibronectin type 3 domain
    cd00063
    Location:429 → 521
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:241 → 327
    I-set; Immunoglobulin I-set domain
    pfam06583
    Location:1148 → 1443
    Neogenin_C; Neogenin C-terminus
    cl11960
    Location:347 → 417
    Ig; Immunoglobulin domain

  3. XM_021073456.1 → XP_020929115.1  netrin receptor DCC isoform X1

    UniProtKB/TrEMBL
    A0A8W4FD29
    Conserved Domains (7) summary
    cd05722
    Location:41 → 136
    Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
    smart00408
    Location:153 → 219
    IGc2; Immunoglobulin C-2 Type
    smart00060
    Location:726 → 805
    FN3; Fibronectin type 3 domain
    cd00063
    Location:429 → 521
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:241 → 327
    I-set; Immunoglobulin I-set domain
    pfam06583
    Location:1148 → 1443
    Neogenin_C; Neogenin C-terminus
    cl11960
    Location:347 → 417
    Ig; Immunoglobulin domain

  4. XM_021073460.1 → XP_020929119.1  netrin receptor DCC isoform X2

    UniProtKB/TrEMBL
    A0A8W4FD29
    Related
    ENSSSCP00000076758.1, ENSSSCT00000097894.1
    Conserved Domains (7) summary
    cd05722
    Location:41 → 136
    Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
    smart00408
    Location:153 → 219
    IGc2; Immunoglobulin C-2 Type
    smart00060
    Location:726 → 805
    FN3; Fibronectin type 3 domain
    cd00063
    Location:429 → 521
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:241 → 327
    I-set; Immunoglobulin I-set domain
    pfam06583
    Location:1148 → 1442
    Neogenin_C; Neogenin C-terminus
    cl11960
    Location:347 → 417
    Ig; Immunoglobulin domain

  5. XM_021073463.1 → XP_020929122.1  netrin receptor DCC isoform X3

    UniProtKB/TrEMBL
    A0A8W4FD29
    Related
    ENSSSCP00000051467.2, ENSSSCT00000049593.3
    Conserved Domains (7) summary
    cd05722
    Location:41 → 136
    Ig1_Neogenin; First immunoglobulin (Ig)-like domain in neogenin and similar proteins
    smart00408
    Location:153 → 219
    IGc2; Immunoglobulin C-2 Type
    smart00060
    Location:726 → 805
    FN3; Fibronectin type 3 domain
    cd00063
    Location:429 → 521
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:241 → 327
    I-set; Immunoglobulin I-set domain
    pfam06583
    Location:1128 → 1423
    Neogenin_C; Neogenin C-terminus
    cl11960
    Location:347 → 417
    Ig; Immunoglobulin domain

  6. XM_013992856.2 → XP_013848310.2  netrin receptor DCC isoform X4

    UniProtKB/TrEMBL
    A0A8D0RFH4
    Conserved Domains (6) summary
    smart00408
    Location:1 → 67
    IGc2; Immunoglobulin C-2 Type
    smart00060
    Location:574 → 653
    FN3; Fibronectin type 3 domain
    cd00063
    Location:277 → 369
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:89 → 175
    I-set; Immunoglobulin I-set domain
    pfam06583
    Location:996 → 1291
    Neogenin_C; Neogenin C-terminus
    cl11960
    Location:195 → 265
    Ig; Immunoglobulin domain
Nucleotide Protein
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