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per2 period circadian regulator 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100151702, updated on 9-Oct-2019

Summary

Official Symbol
per2provided by Xenbase
Official Full Name
period circadian regulator 2provided by Xenbase
Primary source
Xenbase:XB-GENE-486306
See related
Ensembl:ENSXETG00000007987
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fasps; xPer2; period2
Orthologs

Genomic context

See per2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (124469410..124508360, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668244.1 (35445033..35483332, complement)

Chromosome 5 - NC_030681.1Genomic Context describing neighboring genes Neighboring gene hairy and enhancer of split 6, gene 1 Neighboring gene hes family bHLH transcription factor 6 Neighboring gene vesicle associated membrane protein 1 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General protein information

Preferred Names
period circadian protein homolog 2
Names
period circadian clock 2
period homolog 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127410.1NP_001120882.1  period circadian protein homolog 2

    See identical proteins and their annotated locations for NP_001120882.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166199
    UniProtKB/TrEMBL
    B2GUA4
    Conserved Domains (2) summary
    cd00130
    Location:432523
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:435519
    PAS_3; PAS fold

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030681.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    124469410..124508360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970109.2XP_012825563.1  period circadian protein homolog 2 isoform X2

    Conserved Domains (3) summary
    cd00130
    Location:442533
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:12281396
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:432533
    PAS_11; PAS domain
  2. XM_012970108.2XP_012825562.1  period circadian protein homolog 2 isoform X1

    Conserved Domains (3) summary
    cd00130
    Location:442533
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:12281398
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:432533
    PAS_11; PAS domain
  3. XM_012970110.2XP_012825564.1  period circadian protein homolog 2 isoform X3

    Related
    ENSXETP00000028990.1, ENSXETT00000018574.1
    Conserved Domains (3) summary
    cd00130
    Location:432523
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:12181388
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:422523
    PAS_11; PAS domain
  4. XM_018093797.1XP_017949286.1  period circadian protein homolog 2 isoform X1

    Related
    ENSXETP00000028954.1, ENSXETT00000032937.1
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