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RNU4ATAC RNA, U4atac small nuclear (U12-dependent splicing) [ Homo sapiens (human) ]

Gene ID: 100151683, updated on 25-Jan-2022

Summary

Official Symbol
RNU4ATACprovided by HGNC
Official Full Name
RNA, U4atac small nuclear (U12-dependent splicing)provided by HGNC
Primary source
HGNC:HGNC:34016
See related
Ensembl:ENSG00000264229 MIM:601428; AllianceGenome:HGNC:34016
Gene type
snRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LWS; RFMN; TALS; MOPD1; U4ATAC; RNU4ATAC1
Summary
The small nuclear RNA (snRNA) encoded by this gene is part of the U12-dependent minor spliceosome complex. In addition to the encoded RNA, this ribonucleoprotein complex consists of U11, U12, U5, and U6atac snRNAs. The U12-dependent spliceosome acts on approximately 700 specific introns in the human genome. Defects in this gene are a cause of microcephalic osteodysplastic primordial dwarfism type 1 (MOPD). [provided by RefSeq, Jul 2011]
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Genomic context

See RNU4ATAC in Genome Data Viewer
Location:
2q14.2
Exon count:
1
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (121530880..121531009)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (122288456..122288585)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene transcription factor CP2 like 1 Neighboring gene ribosomal protein S17 pseudogene 7 Neighboring gene cytoplasmic linker associated protein 1 Neighboring gene CLASP1 antisense RNA 1 Neighboring gene NIFK antisense RNA 1 Neighboring gene ribosomal protein L12 pseudogene 15 Neighboring gene nucleophosmin 1 pseudogene 32

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables U6atac snRNA binding IEA
Inferred from Electronic Annotation
more info
 
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U4atac snRNP IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029832.1 RefSeqGene

    Range
    5001..5130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics), LRG_1202

RNA

  1. NR_023343.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC012447
    Related
    ENST00000580972.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    121530880..121531009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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